2 October 2024 Fleskes et al. (2022) Ethical guidance in human paleogenomics: new and ongoing perspectives. Annu Rev Genomics Hum Gen. 31:23:627-652.
18 September 2024 Prentout et al. (2024) Conservation of mutation and recombination parameters between mammals and zebra finch. BioRxiv https://doi.org/10.1101/2024.09.05.611523
1 April 2024 Reid et al. (2024) Ecological research ‘in a good way’ means ethical and equitable relationships with Indigenous Peoples and Lands. Nature Ecology & Evolution
4 March 2024 Mérot et al. (2023) Genome assembly, structural variants, and genetic differentiation between lake whitefish young species pairs (Coregonus sp.) with long and short reads. Molecular Ecology 32:1458-1477
5 February 2024 DeAngelo & Elkins (2024) Ethical issues of forensic application of NGS technology. Next Generation Sequencing Technology in DNA Analysis 2024:539-550
AND
Lewis (2024) Unethical studies on Chinese minority groups are being retracted — but not fast enough, critics say. Nature 625:650-654
22 January 2024 Lin et al. (2024) The history of Coast Salish “woolly dogs” revealed by ancient genomics and Indigenous Knowledge. Science 382, 1303-1308
15 January 2024 Mármol-Sánchez et al. (2023) Historical RNA expression profiles from the extinct Tasmanian tiger. Genome Research 33, 1299–1316.
16 October 2023 Bonicelli et al. (2022) The ‘ForensOMICS’ approach for postmortem interval estimation from human bone by integrating metabolomics, lipidomics, and proteomics. eLife 11:e83658.
2 October 2023 Suárez-Menéndez et al. (2023) Wild pedigrees inform mutation rates and historic abundance in baleen whales. Science 381, 990–995
18 September 2023 Sun et al. (2023) Ancient DNA reveals genetic admixture in China during tiger evolution. Nature Ecology & Evolution https://doi.org/10.1038/s41559-023-02185-8
22 March 2023 Borda et al. (2023) Genetics of Latin American Diversity (GLAD) Project: insights into population genetics and association studies in recently admixed groups in the Americas. BioRxiv
8 March 2023 Garcia-Elfring et al. (2023) Piebaldism and chromatophore development in reptiles is linked to the tfec gene. Current Biology dioi: 10.2139/ssrn.4198509
15 February 2023 Mathur et al. (2023) An evolutionary perspective on genetic load in small, isolated populations as informed by whole genome resequencing and forward-time simulations. Evolution qpac061
1 February 2023 Hempel et al. (2022) Blue Turns to Gray: Paleogenomic Insights into the Evolutionary History and Extinction of the Blue Antelope (Hippotragus leucophaeus). Molecular Biology and Evolution msac241
18 January 2023 Banuelos et al. (2022) Associations between forensic loci and expression levels ofneighboring genes may compromise medical privacy. Proc. Nat. Acad. Sci. e2121024119
6 December 2022 Rohde et al. (2004) Modelling the recent common ancestry of all living humans. Nature 431: 562–566
8 November 2022 Lopez et al. (2022) Integrating the human microbiome in the forensic toolkit: Current bottlenecks and future solutions. Forensic Science International: Genetics 102627
18 October 2022 Anderson et al. (2021) High social status males experience accelerated epigenetic aging in wild baboons. eLife 10:e66128
4 October 2022 Bonnet et al. (2022) Genetic variance in fitness indicates rapid contemporary adaptive evolution in wild animals. Science 376:1012–1016
20 September 2022 Hager et al. (2022) A chromosomal inversion contributes to divergence in multiple traits between deer mouse ecotypes. Science 377:399-405
31 March 2022 Pickering et al. (2022) Highly divergent white-tailed deer SARS-CoV-2 with potential deer-to-human transmission. BioRxiv doi: 10.1101/2022.02.22.481551
10 March 2022 Pfennig KS (2021) Biased Hybridization and its impact on adaptive introgression. Trends Ecology & Evolution 36:488-497
17 Febrary 2022 Nosil et al. (2020) Ecology shapes epistasis in a genotype–phenotype–fitness map for stick insect colour. Nature Ecology & Evolution volume 4:1673–1684
3 Febrary 2022 Comeron JM (2017) Background selection as null hypothesis in population genomics: insights and challenges from Drosophila studies. Phil. Trans. R. Soc. B37220160471
20 January 2022 Shang et al. Conserved genomic landscapes of differentiation across Populus speciation continuum. BioRxiv doi: 10.1101/2021.08.26.457771
22 November 2021 López-Cortegano et al (In press) Genetic purging in captive endangered ungulates with extremely low effective population sizes. Heredity doi: 10.1038/s41437-021-00473-2
8 November 2021 Kauffman et al. (2021) Causes, consequences, and conservation of ungulate migration. Annual Review of Ecology, Evolution, and Systematics doi: 10.1146/annurev-ecolsys-012021-011516
25 October 2021 Liu et al. (In press) Ancient and modern genomes unravel the evolutionary history of the rhinoceros family. Cell doi: 10.1016/j.cell.2021.07.032
27 September 2021 Anastasiadi et al. Epigenetic inheritance and reproductive mode in plants and animals. Trends Ecology & Evolution doi 10.1016/j.tree.2021.08.006
29 July 2021 Nadachowska‐Brzyska et al. Genomic inference of contemporary effective population size in a large island population of collared flycatchers (Ficedula albicollis). Molecular Ecology doi: 10.1111/mec.16025
24 June 2021 Gu et al. Climate-driven flyway changes and memory-based long-distance migration. Nature 591 : 259–264
10 June 2021 Tejada-Martinez et al. (2021) Positive selection and gene duplications in tumour suppressor genes reveal clues about how cetaceans resist cancer. Proc. R. Soc. B.28820202592
27 May 2021 Lu et al. (2021) Universal DNA methylation age across mammalian tissues. BioRxiv doi: https://doi.org/10.1101/2021.01.18.426733
13 April 2021 van der Valk et al. (2021) Million-year-old DNA sheds light on the genomic history of mammoths. Nature 591: 265–269
30 March 2021 Teixeira & Huber (2021) The inflated significance of neutral genetic diversity in conservation genetics. Proc. Nat. Acad. Sci. 118: e2015096118
16 March 2021 Grossen et al. (2020) Purging of highly deleterious mutations through severe bottlenecks in Alpine ibex. Nature Communications 11: 1001
2 March 2021 Hunter et al. (2021) Using genomic prediction to detect microevolutionary change of a quantitative trait. BioRxiv doi: 10.1101/2021.01.06.425564
9 February 2021 Booker et al. (In press) Global adaptation complicates the interpretation of genome scans for local adaptation. Evolution Letters doi: 10.1002/evl3.208
26 January 2021 Leroy et al. (2020) Island songbirds as windows into evolution in small populations. BioRxiv doi: 10.1101/2020.04.07.030155
25 November 2020 Chen & Narum (In press) Whole genome resequencing reveals genomic regions associated with thermal adaptation in redband trout. Molecular Ecology doi:10.1111/mec.15717
27 October 2020 McGee et al. (In press) The ecological and genomic basis of explosive adaptive radiation. Nature doi 10.1038/s41586-020-2652-7
06 October 2020 Bonomi et al. (2020) Privacy challenges and research opportunities for genomic data sharing. Nature Genetics 52: 646–654
22 September 2020 Peñalba & Wolf (2020) From molecules to populations: appreciating and estimating recombination. Nature Reviews Genetics doi:10.1038/s41576-020-0240-1
22 July 2020 Barghi et al. (2020) Polygenic adaptation: a unifying framework to understand positive selection. Nature Reviews Genetics doi: 10.1038/s41576-020-0250-z
08 July 2020 Rouselle et al. (2020) Is adaptation limited by mutation? A timescale-dependent effect of genetic diversity on the adaptive substitution rate in animals. PLoS Genetics 6:e1008668
24 June 2020 Chen et al. (2019) Allele frequency dynamics in a pedigreed natural population. Proceedings of the National Academy of Sciences 116: 2158-2164
10 June 2020 Mérot et al. (2020) A roadmap for understanding the evolutionary significance of structural genomic variation. Trends in Ecology & Evolution doi: 10.1016/j.tree.2020.03.002
27 May 2020 Hamlin et al. (2020) Assessing biological factors affecting post speciation introgression. Evolution Letters 4:137-154
13 May 2020 Edge & Coop (2020) Attacks on genetic privacy via uploads to genealogical databases. eLife 9:e51810.
15 April 2020 Selechnik et al. (2020) Bottleneck revisited: increased adaptive variation despite reduced overall genetic diversity in a rapidly adapting invader. BioRxiv doi: https://doi.org/10.1101/557868
01 April 2020 Aylward et al. (2020) Multiscale landscape genetics of American marten at their southern range periphery. Heredity doi: 10.1038/s41437-020-0295-y
04 March 2020 Benjelloun et al. (2019) An evaluation of sequencing coverage and genotyping strategies to assess neutral and adaptive diversity. Molecular Ecology Resources 19:1497–1515.
29 January 2020 Fitzpatrick et al. (2020) Genomic and fitness consequences of genetic rescue in wild populations. Current Biology: doi: 10.1016/j.cub.2019.11.062
15 January 2020 Thompson et al. (2019) Anthropogenic habitat alteration leads to rapid loss of adaptive variation and restoration potential in wild salmon populations. Proceedings of the National Academy of Sciences 116:177-186
27 November 2019 Bonnet al. (2019) The role of selection and evolution in changing parturition date in a red deer population. PLoS Biology 17: e3000493.
13 November 2019 Greene et al. (2019) Local habitat, not phylogenetic relatedness, predicts gut microbiota better within folivorous than frugivorous lemur lineages. Biology Letters 15:20190028
30 October 2019 Mahony et al. (2019) Evaluating genomic data for management of local adaptation in a changing climate: A lodgepole pine case study. Evolutionary Applications DOI: 10.1111/eva.12871
9 October 2019 Breed et al. (2019) The potential of genomics for restoring ecosystems and biodiversity. Nature Reviews Genetics doi: 10.1038/s41576-019-0152-0
18 September 2019 Watanabe et al. (2019) A global overview of pleiotropy and genetic architecture in complex traits. Nature Genetics 51: 1339–1348
4 July 2019 Wang et al. (2019) Genetic basis of ruminant headgear and rapid antler regeneration. Science 364: 1153
20 June 2019 Fages et al. (2019) Tracking five millennia of horse management with extensive ancient genome time series. Cell 177: 1419–1435
6 June 2019 Faria et al. 2018. Evolving inversions. Trends in Ecology & Evolution 34:239-248
23 May 2019 Knief et al. 2019. Epistatic mutations under divergent selection govern phenotypic variation in the crow hybrid zone. Nature Ecology & Evolution doi: 10.1038/s41559-019-0847-9
9 May 2019 Barrett et al. 2019. Linking mutation to survival in wild mice. Science 363:499–504
28 March 2019 Schrider DR, Kern AD. 2018. Supervised machine learning for population genetics: a new paradigm. Trends in Genetics 34:301–312
14 March 2019 Santure AW, Garant D. 2018. Wild GWAS: association mapping in natural populations. Molecular Ecology Resources 8:729–738
28 February 2019 Fugère V, Hendry AP. 2018. Human influences on the strength of selection. Proceedings of the National Academy of Sciences 115: 10070–10075
31 January 2019 Queseda et al. 2018. Giant tortoise genomes provide insights into longevity and age-related disease. Nature Ecology & Evolution 3: 87–95
17 January 2019 Siewart KM, Voight BF. 2017. Detecting long-term balancing selection using allele frequency correlation. Molecular Biology & Evolution 34: 2996–3005
30 November 2018 Eyre-Walker A, Keightley PD. 2007. The distribution of fitness effects of new mutations. Nature Reviews Genetics 8: 610–618
17 November 2018 Foote et al. 2016. Genome-culture coevolution promotes rapid divergence of killer whale ecotypes. Nature Communications 7:11693
3 November 2018 Bilinski P, Albert PS, Berg JJ, Birchler JA, Grote MN, Lorant A, Quezada J, Swarts K, Yang J, Ross-Ibarra J. 2018. Parallel altitudinal clines reveal trends in adaptive evolution of genome size in Zea mays. PLoS Genetics 14:e1007162
19 October 2018 Godet L, Devictor V. In press. What conservation does. Trends Ecology & Evolution doi: 10.1016/j.tree.2018.07.004
5 October 2018 Meyer et al. 2018 Ancient convergent losses of Paraoxonase 1 yield potential risks for modern marine mammals. Science 361:591-594
21 September 2018 Jesmer et al. 2018. Is ungulate migration culturally transmitted? Evidence of social learning from translocated animals. Science 361: 1023–1025
17 August 2018 Skovmand LH, Xu CXY, Servedio MR, Nosil P, Barrett RDH, Hendry AP. 2018. Keystone genes. Trends in Ecology & Evolution doi: 10.1016/j.tree.2018.07.002
3 August 2018 Zepeda Mendoza et al. 2018. Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat. Nature Ecology & Evolution 2:659-668.
27 July 2018 Yoder AD, Poelstra JW, Tiley GP, Williams RC. 2018. Neutral theory is the foundation of conservation genetics. Molecular Biology and Evolution doi:10.1093/molbev/msy076
13 July 2018 Daly KG, et al. 2018. Ancient goat genomes reveal mosaic domestication in the Fertile Crescent. Science 361: 85–88
6 July 2018 Hendricks S, Anderson EC, Antao T, Bernatchez L, Forester BR, Garner B, Hand BK, Hohenlohe PA, Kardos M, Koop B, Sethuraman A, Waples RS, Luikart G. 2018. Recent advances in conservation and population genomics data analysis. Evolutionary Applications doi:10.1111/eva.12659
15 June 2018 Tunstall T, Kock R, Vahala J, Diekhans M, Fiddes I, Armstrong J, Paten B, Ryder OA, Steiner CC. 2018. Evaluating recovery potential of the northern white rhinoceros from cryopreserved somatic cells. Genome Research doi:10.1101/gr.227603.117
01 June 2018 Laine VN, Gossmann TI, Schachtschneider KM, Garroway CJ, Madsen O, Verhoeven KJ, Jager V, Megens H-J, Warren W-C, Minx P, Crooijmans RPMA, Corcoran P, The Great Tit HapMap Consortiumw, Sheldon BC, Slate J, Zeng K, Oers K, Visser ME, Groenen MM. 2016. Evolutionary signals of selection on cognition from the great tit genome and methylome. Nature Communications 7:10474
25 May 2018 Bay RA, Harrigan RJ, Underwood VL, Gibbs HL, Smith TB, Ruegg K. 2018. Genomic signals of selection predict climate-driven population declines in a migratory bird. Science 359:83-86.
18 May 2018 Prince DJ, O'Rourke SM, Thompson TQ, Ali OA, Lyman HS, Saglam IK, Hotaling TJ, Spidle AP, Miller MR. 2017. The evolutionary basis of premature migration in Pacific salmon highlights the utility of genomics for informing conservation. Science Advances 3: e1603198.
11 May 2018 Micheletti SJ, Narum SR. 2018. Utility of pooled sequencing for association mapping in nonmodel organisms. Molecular Ecology Resources doi: 10.1111/1755-0998
26 June 2017 De Barba M, Miquel C, Lobreaux S, Quenette PY, Swenson JE, Taberlet P. 2017. High-throughput microsatellite genotyping in ecology: improved accuracy, efficiency, standardization and success with low-quantity and degraded DNA. Molecular Ecology Resources 17, 492–507.
05 June 2017 Tigano A, Shultz AJ, Edwards SV, Robertson GJ, Friesen VL. 2017. Outlier analyses to test for local adaptation to breeding grounds in a migratory arctic seabird. Ecology & Evolution 7: 2370-2381.
29 May 2017 Ziegler M, Seneca FO, Yum LK, Palumbi SR, Voolstra CR. 2017. Bacterial community dynamics are linked to patterns of coral heat tolerance. Nature Communications 8: 14213.
15 May 2017 Epstein B, Jones M, Hamede R, Hendricks S, McCallum H, Murchison EP, Schonfeld B, Wiench C, Hohenlohe P, Storfer A. 2016. Rapid evolutionary reponse to transmissible cancer in Tasmanian devils. Nature Communications 7: 12684.
11 April 2017 Hoban S, Kelley JL, Lotterhos KE, Antolin MF, Bradburd G, Lowry DB, Poss ML, Reed LK, Storfer A, Whitlock MC. 2016. Finding the genomic basis of local adaptation in non-model organisms: pitfalls, practical solutions, and future directions. The American Naturalist. 188: 379-397.
